BtaEX0001445 @ bosTau6
Exon Skipping
Description
Quinone oxidoreductase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A6QQF5]
Coordinates
chr16:60833854-60858363:-
Coord C1 exon
chr16:60858282-60858363
Coord A exon
chr16:60853455-60853636
Coord C2 exon
chr16:60833854-60835584
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTGTTCTTCATGTAGGTA
3' ss Score
10.15
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAAACTGTTTTAGTGACGGCAGCAGCTGGAGCCACAGGCCTCGCCGTGATAGATGTGGCAACAAACATTCTTCAGGCCAAG
Seq A exon
GTAATAGCTGCAGCTGGAAGTGATGAAAAGTGTCAGCTGGCGATGCAGAGTGGGGCACAGTCCAGCGTGAACTACAGTCGGGGCAGCCTTAAGGAGGCTGTGGGGAAGCTGGTGGGCAGTGGCGGGGTGAACGTGGTCATTGACATGGTGGGAGGAGACATCTTCCTGGAGGCTCTCCGCAG
Seq C2 exon
GTCAATGATGCCTTCCTTCATGTCACACAGCGTAAATCCACAGGCAAGGTGCTTCTCTCCCTTAAATAAATTTTCACTTCAGCAAACTCAGCATGTCTAAACCCAAACTCATCATCTTTCCAAAGAAACCTGATTTCCCATCCATGTTTTTTTTCCCATATTACCACCTTCCTTATTAATCCAGTTTCAAGATCTTTTAGAGTCATCTTTTATTCTGTTTTCTTATTCCTAGATAGTGTGATCATGTACTTTATTGTCCAGACTTGGACACAGTTGAGAGTGAAAGGATGCTGTTAGTAATTACACCAGGAGAACAGGTGTCCCAAGATGTATGATCACCTATTCATAACGCATCCATGGCCAAGTTCTGTCATCTCCACCTCTAAGAAGTCTTACACACCACATCCTGTTTTCCATTCTGACTAATCATGTCATATCTGCTAATTCCAGTGACCTCCTAACTTTCCTACCTTTAATCTACCCCCTCCCTCTCCATTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046172_MULTIEX1-5/7=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(5.0=21.4),PF0010721=ADH_zinc_N=PU(12.1=57.1)
A:
PF0010721=ADH_zinc_N=FE(45.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTAGTGACGGCAGCAGCT
R:
AGGAAGGTGGTAATATGGGAAAA
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development