RnoEX6044914 @ rn6
Exon Skipping
Gene
ENSRNOG00000005177 | Tp53i3
Description
tumor protein p53 inducible protein 3 [Source:RGD Symbol;Acc:1304982]
Coordinates
chr13:75120375-75126834:+
Coord C1 exon
chr13:75120375-75120456
Coord A exon
chr13:75124183-75124364
Coord C2 exon
chr13:75126606-75126834
Length
182 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTGTCTTCACTCAGGTC
3' ss Score
9.93
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGAGACTGTTTTAGTGACAGCAGCTGCCGGAGCCACAGGCCTCGCAGTGATAGACGTGGCGACAAACGTATTCTGTGCCAAG
Seq A exon
GTCATAGCTGCAGCTGGGAGCGACGAGAAATGCAAGCTGGCGATGCAGAGGGGAGCACAGTCCGGCGTGAACTACAGCCAGGGCAGCCTGAAGGATGCAGTGAAGAAGCTGGTGGGCAGCAGTGGGGTGAATGTGGCCATTGACATGGTGGGAGGAGATGTCTTCCTGGACTCTCTCCGCAG
Seq C2 exon
CCTGGCGTGGGAGGGCAGGATTGTGGTGTTGGGATTCGCCGGAGGAAACATCGCATCCGTGCCCAGCAACCTGTTGCTCCTGAAGAACATCTCTGCCATGGGCCTGTACTGGGGTCGCTACCAACACCAGGACTTTGCAGTGTTTTCCAAGAGCATGTCCACAGCCCTGCAGTACTGCCAGCAAGGGCTCATCCACCCACACACTGGTGCTGTCTTCAAGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005177-'11-15,'11-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(19.3=100),PF0010721=ADH_zinc_N=PU(22.5=57.1)
A:
PF0010721=ADH_zinc_N=FE(44.8=100)
C2:
PF0010721=ADH_zinc_N=PD(41.8=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGACGTGGCGACAAACGT
R:
GCTTGAAGACAGCACCAGTGT
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]