GgaEX0028954 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVJ2]
Coordinates
chr8:6588618-6590034:+
Coord C1 exon
chr8:6588618-6588801
Coord A exon
chr8:6589157-6589338
Coord C2 exon
chr8:6589806-6590034
Length
182 bp
Sequences
Splice sites
3' ss Seq
GACTTTCCCTTTGCTCTCAGGTG
3' ss Score
10.3
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAAACAGTGCTGGTGACAGCAGGAGCTGGAGCCACTGGCCTTGCCATCATTGATCTGGCTGTCAACGTGTTCCAGGCAAAGGTACTGAGGTGTTGTCCTTTTTCACCTGTCCTCACGTGCTCCAGCCTGGGCAAGCAGGTGGCCTGGAGTCACGGTGATGCAGTGGCAGAGAACCAGGACCAG
Seq A exon
GTGATAGCAGCAGCCGGCAGCGATCCCAAGTGCCAGCTGGTCCTGGCAAATGGGGCAAGCCATGCAGTGAACTACAGCCAGAACAGTCTCAGGGAGCAGGTGACAGCACTCACAGGTGGCAGAGGGGTCGACGTGGCCATTGAAGCTGTTGGTGGGGACATCTTCAAGGCTGTCCTGCAGAG
Seq C2 exon
TTTGGCTTGGGAGGGCAGGATTGTGGTGATGGGTTTTGCCGGAGGGAAAATCCCCTCAATTCCTGCCAACCTGCTGCTCCTGAAGAACGTGTCAGCCATGGGAGTGTACTGGAGTCGGTACCAGCAGGAGGACTTCCCTCTTTTCTCCTCTGCCATGTCCTCCCTTCTTCAGTATGGCCGGGAGGGAAAGATCCATCCGCACATTGGAGCAGTCTTCAAGCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004341_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
89%=89=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=PU(12.2=57.1)
A:
PF0010721=ADH_zinc_N=FE(45.8=100)
C2:
PF0010721=ADH_zinc_N=PD(40.5=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAACGTGTTCCAGGCAAA
R:
CCGACTCCAGTACACTCCCAT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]