BtaEX0001703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62061125-62064878:+
Coord C1 exon
chr19:62061125-62061215
Coord A exon
chr19:62062487-62062626
Coord C2 exon
chr19:62064762-62064878
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTTTACATATTAGTTT
3' ss Score
5.89
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATAGGAAAGTGATCCTGTCCAAAGGGAGGCTGAAGTGCGCGGGCTCGTCTGTCTTTTTGAAGCGAAGATGGGGTCTCGGCTATCACCTAAG
Seq A exon
TTTGTACAGAAATGAAACGTGTGATCCAGAAAAAATAACATCCCTCATTAATCACCACATCCCTGATGCTAAACTGAAAACGGAAAGCAAAGAAAAGCTTGTGTATACATTGCCTGCGGAAAGGACAAATAAATTTCCAG
Seq C2 exon
ACCTCTTCAGTGACCTCGATGAGGATTGCAGCCTGGGTGTGCTGAGTTATGAGGTTTCCACATCAACTCTGAATGAAGTCTTTACGAAACTGGAGGGAAACTCAATGGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'22-16,'22-15,23-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTGTCCAAAGGGAGGCT
R:
CTCAGCCATTGAGTTTCCCTCC
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development