GgaEX7009488 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8217559-8218609:-
Coord C1 exon
chr18:8218519-8218609
Coord A exon
chr18:8217780-8217919
Coord C2 exon
chr18:8217559-8217678
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTTAATACAAACAGGAT
3' ss Score
6.75
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCGAAAAGCTTTCCTTTCAAATGGGAGAGTACAGTGTGTTGGCTCATCTCTGTACTTGAAGAGAAAGTGGGGAATTGGCTATCACTTAAG
Seq A exon
GATATGCATAAATGATCAGTGTGACCCTGGGCTTGCATCATCCCTGGTCAGGCGGTACATCCCCAATGCTGTGATCAAAGGGCAGGATGGGGATGAGCTGTGTTACGTGCTGCCTCTGGAAAACACCAAGAGCTTCCCAG
Seq C2 exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAAGCTTTCCTTTCAAATGGG
R:
CTTTATGATCAATAGCTTCCCTGCCT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]