RnoEX6050306 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98448242-98452367:-
Coord C1 exon
chr10:98452277-98452367
Coord A exon
chr10:98450126-98450265
Coord C2 exon
chr10:98448242-98448361
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCACTCTTTCTAAATGTCAGTTT
3' ss Score
5.48
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACAGGAAGGTGTTTATATCCAACGGGAGACTGAGGTGTGCAGGCTCTTCTCTGTTTCTGAAGAAGAAATGGGGCATCGGCTATCACCTAAG
Seq A exon
TTTGCATTTGAATGAAACTTGTGATCCAGAGAGTATAACATCACTGGTCAAAAAGCACATACCGGACGCCAGACTGACTGCACAAAGCGACGAACAGCTTGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAG
Seq C2 exon
ACCTTTACAGGGACCTTGACAGATGCTCTAACCACGGCATTGAGGATTATGATGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAGGGGAAGTCCATGGCTGAGGAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGGTGTTTATATCCAACGG
R:
CGGTTCCTCAGCCATGGACTT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]