MmuEX6090846 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110000833-110005603:-
Coord C1 exon
chr11:110005513-110005603
Coord A exon
chr11:110002823-110002962
Coord C2 exon
chr11:110000833-110000952
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCAGTCTTTCTAAATGTCAGTTT
3' ss Score
4.15
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACAGGAAGGTGTTTATATCCAATGGGAGACTGAAGTGTGCGGGCTCTTCTCTGTTCCTGAAGAAGAAATGGGGCATTGGCTATCATCTAAG
Seq A exon
TTTGCATTTGAATGAAGCGTGTGATCCAGAGGGTATAACGTCACTGGTCAAAAAGCACATCTCCGACGCCAGGCTGACCACGCAAAGCGAAGAACGGCTTGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAG
Seq C2 exon
ACCTTTACCGGGATCTTGATAGATGTTCTAACCAAGGCATTGAGGATTATGGCGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAAGGGAAGTCGATGGCTGATGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGGTGTTTATATCCAATGGG
R:
TGATTCATCAGCCATCGACTTCC
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: