BtaEX0001734 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62118696-62124972:+
Coord C1 exon
chr19:62118696-62118834
Coord A exon
chr19:62123081-62123220
Coord C2 exon
chr19:62124853-62124972
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTACTCTTTTTAAACATCAGTTT
3' ss Score
4.76
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTTGCTGTTGGATGAGCCAACTGCGGGGTCAGACCCTCTTTCGAGACACCGGGTGTGGAACCTCCTGCGAGAGAGGAAGTCAGACCACGTGGTCCTCTTCAGCACCCCGTTCATGGATGAGGCTGACGTCCTGGCTG
Seq A exon
TTTGCATCTGAATGAGACGTGTGATCCAGACAGTGTAACATCGATTGTTAAACACCACGTCCCTGATGCCAAATTAACAGCCCAAAGTGAAGAAAAGCTGGAGTATATTCTGCCTATGGAAAGGACAAACAAATTTCCAG
Seq C2 exon
ACCTCTACAGGGATCTTGAAAGCTGTTCCAACCAGGGCATTGAGAATTATGGTGTTTCCATGACAACACTGAATGAAGTGTTCTTGAAATTAGAAGGAAAATCAGCTTTTGATGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGCCAACTGCGGG
R:
TCATCAAAAGCTGATTTTCCTTCT
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development