GgaEX6016359 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8195335-8196434:-
Coord C1 exon
chr18:8196344-8196434
Coord A exon
chr18:8195948-8196087
Coord C2 exon
chr18:8195335-8195451
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTATTTGAACAGGAT
3' ss Score
10.23
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACCGCAAGGCTTTTATCTCACGTGGGAGGCTGAAGTGTGTGGGCTCCTCTTTGTTCTTGAAGAATAAGTGGGGGATCGGCTATCACTTAAG
Seq A exon
GATCCATGTCAGTGATTCTTGTGACGTAGAGAATGTGACGTGTCTGGTTAAGCAGTATGTCCCCAAAGTCATATTCTCGGGACATGGTCAATATGAGCTGAGATATAAACTGCCATTAGAAAACGTGAATAAATTCCCAG
Seq C2 exon
ATCTGTTCCGGGGCCTTGACAACTGCTCTGACCTGGGAATCATCAATTATGGAGTCAGTATGACAACCCTGGAGGATGTCTTCCTGAGACTGGAAGAAGCTGCAGTGGATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGCTTTTATCTCACGTG
R:
TCTGGATCCACTGCAGCTTCT
Band lengths:
204-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]