RnoEX0004938 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98273728-98277125:-
Coord C1 exon
chr10:98277035-98277125
Coord A exon
chr10:98274510-98274649
Coord C2 exon
chr10:98273728-98273847
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTTTTAAACATCAGTTT
3' ss Score
4.04
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACAGGAAAGTGTTCATCTCCAGGGGGAAGCTGAAGTGTGCAGGCTCATCTCTCTTCCTGAAGAAGAAATGGGGCGTTGGGTATCACTTAAG
Seq A exon
TTTGCAGCTGAAGGAAGTCTGTGTTCCGGAGAACATCACATCACTGGTGAAACAGCACATCCCTGAGGCCAAGCTGTCAGCTGAAAGGGAGAGGACACTTGTCTATACATTACCCTTAGAAACAACCTATAGATTTCCAG
Seq C2 exon
AACTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGATAGCTATGGTGTTTCCATGACGACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAATCAGCAATTGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'20-23,'20-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000005489fB317
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAGTGTTCATCTCCAGGG
R:
CTGGTTCTTCAATTGCTGATTTTCCT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]