MmuEX6090794 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109823108-109826345:-
Coord C1 exon
chr11:109826255-109826345
Coord A exon
chr11:109823895-109824034
Coord C2 exon
chr11:109823108-109823227
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTTAAACATCAGTTT
3' ss Score
4.72
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATAGGAAAGTGTTCATCTCCAATGGGAGGCTGAAGTGTGCAGGATCATCGCTCTTTCTGAAGAAGAAATGGGGAGTTGGGTATCACTTAAG
Seq A exon
TTTGCAGCTGAAAGAAGTCTGTGTTCCAGAAAACATCACATCGCTTGTTAAACAGCACATCCCTGCAGCCAAGCTATCAGCTGAAGGGGAAGGAAAGCTTCTCTATACATTACCCTTAGAAACAACTTATAGATTTCCAG
Seq C2 exon
AGCTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGAAAACTATGGTGTTTCCATGACAACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAAGCATCAATTGATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGTGTTCATCTCCAATGGG
R:
ATCAATTGATGCTTTTCCTTCTAGCT
Band lengths:
202-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: