GgaEX6016359 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7930029-7931128:-
Coord C1 exon
chr18:7931038-7931128
Coord A exon
chr18:7930642-7930781
Coord C2 exon
chr18:7930029-7930145
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTATTTGAACAGGAT
3' ss Score
10.23
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ACCGCAAGGCTTTTATCTCACGTGGGAGGCTGAAGTGTGTGGGCTCCTCTTTGTTCTTGAAGAATAAGTGGGGGATCGGCTATCACTTAAG
Seq A exon
GATCCATGTCAGTGATTCTTGTGACGTAGAGAATGTGACGTGTCTGGTTAAGCAGTATGTCCCCAAAGTCATATTCTCGGGACATGGTCAATATGAGCTGAGATATAAACTGCCATTAGAAAACGTGAATAAATTCCCAG
Seq C2 exon
ATCTGTTCCGGGGCCTTGACAACTGCTCTGACCTGGGAATCATCAATTATGGAGTCAGTATGACAACCCTGGAGGATGTCTTCCTGAGACTGGAAGAAGCTGCAGTGGATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGCTTTTATCTCACGTG
R:
TCTGGATCCACTGCAGCTTCT
Band lengths:
204-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]