RnoEX0004967 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324582-98364325:-
Coord C1 exon
chr10:98364235-98364325
Coord A exon
chr10:98363466-98363605
Coord C2 exon
chr10:98324582-98324701
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTTTTGAATAACAGCTT
3' ss Score
4.74
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
Seq A exon
CTTGCAGCTGAGTGAAACGTGTGTGCACGAAAGAATAACATCGCTCGTCAAACAGCACATCCCCGATTCCAAGTTGTCGGCAGAAAGCGAAGGGAAACTGAATTACATATTACCCCTGGAAAGGACAAACAAATTTCCAG
Seq C2 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-16/37=15-35
Average complexity
C2
Mappability confidence:
93%=94=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAAGTGTTCATCTCCCAGG
R:
CTCAGCTTCCCAGACACCATG
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]