HsaEX0000242 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67186499-67188794:-
Coord C1 exon
chr17:67188704-67188794
Coord A exon
chr17:67187317-67187456
Coord C2 exon
chr17:67186499-67186618
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTTGAAATAATAGTTT
3' ss Score
1.34
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATAGGAAAGTATTTCTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAG
Seq A exon
TTTACACAGGAATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAG
Seq C2 exon
ATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAAGTATTTCTGTCTAATGGGA
R:
CTGGTTCATCAATTGCTGATTTTCCT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)