MmuEX0003021 @ mm10
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110065165-110068868:-
Coord C1 exon
chr11:110068778-110068868
Coord A exon
chr11:110068025-110068164
Coord C2 exon
chr11:110065165-110065284
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTCTTGAATAACAGCTT
3' ss Score
4.24
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATAGGAAAGTGTTCATCTCCAAGGGGAAGCTGAAGTGTGCAGGATCTTCTTTGTTTCTGAAGAAGAAATGGGGGATTGGTTATCACTTAAG
Seq A exon
CTTGCAGCTGAGTGAAACGTGTGTGCATGAAAGAATAACATCACTTGTCAAACAGCACATCCCCGATTCCAAGTTGTCAGCAGAAAGCGAAGGGAAACTGAGCTACATATTACCCCTGGAAAGAACAAACAAGTTTCCAG
Seq C2 exon
ATCTTTATAGGGATCTCGAGAGAAGTCCAGACCTGGGAATTGAGAACTATGGCGTTTCTATAACAACACTGACTGAGGTCTTTCTGAAACTGGAAGGAAAATCATCTATTGACCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'23-26,'23-23,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAAGTGTTCATCTCCAAGGG
R:
CTGATTGGTCAATAGATGATTTTCCT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types