BtaEX6091120 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61976657-61978237:+
Coord C1 exon
chr19:61976657-61976747
Coord A exon
chr19:61977232-61977371
Coord C2 exon
chr19:61978118-61978237
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTTTTGAAAATTTAGTTT
3' ss Score
4.12
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATAGGAAAGTGTTTCTGTCTAACGGGAAACTCAGATGCGCAGGGTCGTCTCTGTTCCTGAAGCGGAAATGGGGTATTGGATATCACTTGAG
Seq A exon
TTTACACAGGAATGAAAGGTGCAATACGGAGAGAATCACATCCCTCATCACACAGCACATCTCAGATGCCAAGTTAACAGCAGAAAATGAAGAAAAACTTGTGTATACTTTGCCCCTGGAGAGAACAGACAAGTTTCCAG
Seq C2 exon
ATCTTTGCAGAGACCTTGAAAACTCTTCTGACCAGGGCATAATGAATTTTGGTGTTTCCATGACAACTCTAAATGAAGTATTCTTGAACCTAAAAGGCAGATCAGCAATTAATGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAAGTGTTTCTGTCTAACGGG
R:
CTGGCCCATTAATTGCTGATCTG
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]