BtaEX0002232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017258 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:111868738-111871923:+
Coord C1 exon
chr2:111868738-111868876
Coord A exon
chr2:111870479-111870629
Coord C2 exon
chr2:111871799-111871923
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCTTCTCTAATGCAGAAA
3' ss Score
9.14
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
GACATCGTTTCTCTGGTCCCTCGCCTGCGGCACATCATCACTGTAGATGGAAAGCCGCCGACCTGGTCTGAGTTCCCCAAGGGCGTCATCGTGCACACCATGGCGGCCGTGCGGGCTCTGGGAGCCAAGGCCAGCATGG
Seq A exon
AAAACAAACCCCTTAGCAAACCAGCGCCCTCAGATATTGCAGTAATCATGTACACGAGTGGATCCACAGGAATTCCAAAGGGGGTCATGATCTCTCATAGTAACATTATTGCTGGTATAACTGGGATGGCGGAAAGGATTCCAGAACTCGG
Seq C2 exon
GGAGAAAGATGTTTACATTGGATATTTGCCTCTGGCCCACGTCTTAGAATTAAGTGCTGAGCTTGTCTGTCTCTCCCATGGATGCCGCATTGGCTACTCTTCACCACAGACTTTAGCAGATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017258-'15-12,'15-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.7=100)
A:
PF0050123=AMP-binding=FE(10.5=100)
C2:
PF0050123=AMP-binding=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTTTCTCTGGTCCCTCG
R:
TGGTGAAGAGTAGCCAATGCG
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development