DreEX0010832 @ danRer10
Exon Skipping
Gene
ENSDARG00000014674 | acsl3b
Description
acyl-CoA synthetase long-chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
Coordinates
chr2:47643956-47649540:+
Coord C1 exon
chr2:47643956-47644094
Coord A exon
chr2:47647638-47647788
Coord C2 exon
chr2:47649417-47649540
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTGAATGTGTCTGTGTGCAGTAA
3' ss Score
6.33
5' ss Seq
TGAGTATGC
5' ss Score
1.94
Exon sequences
Seq C1 exon
GCTATTCTGTTAGAAGTCCCCAGACTCAAGCACATTATAGTGGTCGACACGAAACCCACAAGCTGGCCTGATCTCCCCAGAGGCATCATGGTACATAACATGGCAGCGGTGCAAGAATTGGGATCCAAACCTGAAAACA
Seq A exon
TAATGGTGTCCCGCAGGCAGCCTGTCCCATCTGATATCGCAGTGATCATGTACACCAGCGGCTCTACAGGCATTCCTAAAGGAGTCATGATCTCTCACAGCAACATCATCGCGGGCATCACTGGCATGGCTGAACGCATCCCGAACCTTGA
Seq C2 exon
TGAGAATGACACCTATATTGGCTATCTGCCTCTCGCTCATGTCCTGGAGCTCAGCGCTGAGCTGGTGTGTGTGTCACACGGCTGTCGGATTGGATATTCATCACCTCAGACTCTTGCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014674_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.024
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(10.5=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCAGACTCAAGCACATT
R:
TGGTCAGCAAGAGTCTGAGGT
Band lengths:
247-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]