HsaEX0002070 @ hg38
Exon Skipping
Gene
ENSG00000123983 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:222919064-222922831:+
Coord C1 exon
chr2:222919064-222919202
Coord A exon
chr2:222921280-222921430
Coord C2 exon
chr2:222922708-222922831
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTCTCTTCAATGCAGAAA
3' ss Score
8.97
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GATATAGTTTCTTTGGTCCCACGCCTGCGGCACATCATCACTGTTGATGGAAAGCCACCGACCTGGTCCGAGTTCCCCAAGGGCATCATTGTGCATACCATGGCTGCAGTGGAGGCCCTGGGAGCCAAGGCCAGCATGG
Seq A exon
AAAACCAACCTCATAGCAAACCATTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGATCCACAGGACTTCCAAAGGGAGTCATGATCTCACATAGTAACATTATTGCTGGTATAACTGGGATGGCAGAAAGGATTCCAGAACTAGG
Seq C2 exon
AGAGGAAGATGTCTACATTGGATATTTGCCTCTGGCCCATGTTCTAGAATTAAGTGCTGAGCTTGTCTGTCTTTCTCACGGATGCCGCATTGGTTACTCTTCACCACAGACTTTAGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123983_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.058 C2=0.024
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(25.8=83.0)
A:
PF0050123=AMP-binding=FE(10.5=100)
C2:
PF0050123=AMP-binding=FE(13.2=100)
Main Skipping Isoform:
ENST00000357430fB8602
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTTTCTTTGGTCCCACGCC
R:
TGGTGAAGAGTAACCAATGCGG
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development