RnoEX6040539 @ rn6
Exon Skipping
Gene
ENSRNOG00000014718 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:RGD Symbol;Acc:70552]
Coordinates
chr9:84578569-84582853:+
Coord C1 exon
chr9:84578569-84578707
Coord A exon
chr9:84580641-84580791
Coord C2 exon
chr9:84582730-84582853
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTCAATATAGACA
3' ss Score
8.39
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
GATATCGTCTCTTTGGTCCCACGTCTGCGGCATATCATTACTGTTGATGGGAAGCCTCCAACCTGGTCTGAGTTCCCCAAGGGCGTCATTGTACACACCATGGCTGCAGTGCAGGCTCTAGGAGTAAAGGCTGACGTGG
Seq A exon
ACAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGATCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCCTCTATAACGGGGATGGCGAGAAGGATTCCAAGACTGGG
Seq C2 exon
AGAGGAAGATGTATACATTGGATATTTGCCCCTGGCACATGTTCTAGAATTAAGCGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGGATTGGCTACTCTTCACCACAGACATTAGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014718-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.7=100)
A:
PF0050123=AMP-binding=FE(10.5=100)
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTTTGGTCCCACGTCTG
R:
TGTCTGTGGTGAAGAGTAGCCA
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]