BtaEX0002246 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18403871-18410018:+
Coord C1 exon
chr25:18403871-18403994
Coord A exon
chr25:18406410-18406490
Coord C2 exon
chr25:18409891-18410018
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTTTTGTAAACAGGGA
3' ss Score
9.51
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
TCTTAGGTTCCCCACTCTGGAACACTGCTGTACTGGTGGGGAAGCCCTGCTGCCCGAGGAGCAAGAACAGTGGAAAAGACAGACAGGTGTTCTGCTCTACCAGGCCTATGGACAGTCAGAAGCG
Seq A exon
GGAATAAGCTGTGGCACTCTCCGGGGGATGAAGATCAAGCCAGGTTCCATGGGGAAGGCCATCCCACCCTTTGACATTCAG
Seq C2 exon
AATAACCCAGAGAAAACAGCTGAAGTGGAATGTGGGGACTTTTATAACACTGGGGACAGAGCAACTATTGACGAAGAGGGCTACTTCTGGTTCCTTGGGAGGAGTGACGATGTCATCAATGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417_MULTIEX1-8/12=7-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTGCTGTACTGGTGGG
R:
TAGTTGCTCTGTCCCCAGTGT
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development