RnoEX0006221 @ rn6
Exon Skipping
Gene
ENSRNOG00000042084 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:RGD Symbol;Acc:708383]
Coordinates
chr1:189388259-189389974:+
Coord C1 exon
chr1:189388259-189388382
Coord A exon
chr1:189389323-189389403
Coord C2 exon
chr1:189389873-189389974
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTCTTTTGTAAACAGGGG
3' ss Score
8.12
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
TCTCAGGTTCCCCACCCTGGAGCATTGCGCAACTGGTGGAGAGAGCCTGCTGCCTGAGGAATATGAGCAGTGGAAGCAAAGGACAGGCCTTTCCATTCATGAGGTCTATGGACAGTCAGAAACG
Seq A exon
GGGATCACCTGTGCCATCTTCCGGGAAATGAAGGTCAAGCGAGGCTCCATAGGGAAGGCCATTTTACCCTTTGACATACAG
Seq C2 exon
ATCATCGATGAGAAGGGCAACATCCTCCCGCCCAACACGGAAGGATACATTGGCATCAGGATCAAGCCCACCAGGCCGCTAGGCCTCTTCGTGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042084_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGCCTGAGGAATATG
R:
TATCCCACGAAGAGGCCTAGC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]