BtaEX0002295 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011215 | ACTN4
Description
Bos taurus actinin, alpha 4 (ACTN4), mRNA. [Source:RefSeq mRNA;Acc:NM_001098052]
Coordinates
chr18:48738734-48740922:+
Coord C1 exon
chr18:48738734-48738880
Coord A exon
chr18:48740118-48740183
Coord C2 exon
chr18:48740764-48740922
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGGGTCCTGGAGCAGAAG
3' ss Score
0.98
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
CACATCCGGGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCCGCACCATCAACGAGGTCGAGAACCAGATCCTCACCCGCGACGCCAAGGGCATCAGCCAGGAGCAGATGCAGGAGTTCCGGGCGTCCTTCAACCACTTCGACAAG
Seq A exon
AAGCAGACAGGCAGCATGGACTCCGATGACTTCAGGGCTCTGCTTATCTCCACAGGATACAGCCTG
Seq C2 exon
GGCGATGCCGAGTTCAACCGCATCATGAGCGTAGTGGACCCCAACCACAGCGGCCTCGTGACCTTCCAAGCCTTCATCGACTTCATGTCGAGGGAGACCACCGACACAGACACGGCCGACCAGGTCATCGCCTCCTTCAAGGTCCTGGCTGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011215_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(31.3=53.1)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAACCAGATCCTCACCC
R:
GTCGATGAAGGCTTGGAAGGT
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development