RnoEX0006383 @ rn6
Exon Skipping
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87079316-87080356:-
Coord C1 exon
chr1:87080276-87080356
Coord A exon
chr1:87079957-87079967
Coord C2 exon
chr1:87079316-87079474
Length
11 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGCTTATCTCCACAGGAT
3' ss Score
10.39
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
GACCATGGCGGGGCACTGGGGCCTGAGGAATTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGAATGACCGGCAG
Seq A exon
GATACAGCCTG
Seq C2 exon
GGTGATGCTGAGTTCAACCGGATCATGAGTGTGGTCGACCCCAACCATAGTGGCCTCGTGACCTTCCAAGCCTTCATTGACTTCATGTCAAGGGAGACCACAGACACAGACACCGCCGATCAGGTCATCGCCTCCTTCAAGGTCCTGGCCGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433-'50-38,'50-37,51-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(60.0=66.7)
A:
NO
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
ENSRNOT00000089305fB546
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGACGTGGAGAATGACC
R:
GAAGGCTTGGAAGGTCACGAG
Band lengths:
101-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]