RnoEX0006382 @ rn6
Exon Skipping
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87079316-87081093:-
Coord C1 exon
chr1:87080947-87081093
Coord A exon
chr1:87080276-87080356
Coord C2 exon
chr1:87079316-87079474
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCGATGGCCTCCCGGCAGGAC
3' ss Score
7.58
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
CACCTCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATTGCCCGCACCATCAACGAGGTAGAGAATCAGATCCTCACCCGAGATGCCAAGGGCATCAGCCAGGAGCAAATGCAGGAGTTCCGAGCCTCCTTCAACCACTTTGACAAG
Seq A exon
GACCATGGCGGGGCACTGGGGCCTGAGGAATTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGAATGACCGGCAG
Seq C2 exon
GGTGATGCTGAGTTCAACCGGATCATGAGTGTGGTCGACCCCAACCATAGTGGCCTCGTGACCTTCCAAGCCTTCATTGACTTCATGTCAAGGGAGACCACAGACACAGACACCGCCGATCAGGTCATCGCCTCCTTCAAGGTCCTGGCCGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433-'48-38,'48-34,50-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(31.3=53.1)
A:
PF134051=EF-hand_6=PD(60.0=66.7)
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGCAGGAGTTCCGAG
R:
TGAAGGAGGCGATGACCTGAT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]