MmuEX0003638 @ mm9
Exon Skipping
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:29679520-29681254:-
Coord C1 exon
chr7:29681108-29681254
Coord A exon
chr7:29680140-29680205
Coord C2 exon
chr7:29679520-29679678
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCGTCCTGGGAGCAGAAG
3' ss Score
2.52
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
CATATCCGTGTGGGCTGGGAGCAGCTGCTCACGACCATTGCCCGCACCATCAATGAGGTGGAAAACCAGATCCTCACCCGAGATGCCAAGGGTATCAGCCAGGAGCAGATGCAGGAGTTCCGGGCATCCTTCAACCATTTTGACAAG
Seq A exon
AAGCAGACAGGCAGCATGGACTCAGATGACTTCAGGGCCCTGCTTATCTCCACAGGATACAGCCTG
Seq C2 exon
GGTGATGCTGAGTTCAACCGGATCATGAGTGTGGTTGATCCCAACCATAGTGGCCTCGTGACCTTCCAAGCCTTCATTGACTTCATGTCAAGGGAGACCACAGACACAGACACAGCTGATCAGGTCATCGCCTCCTTCAAGGTCCTGGCAGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808_MULTIEX1-3/3=1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(31.3=53.1)
A:
PF138331=EF-hand_8=PU(37.7=90.9)
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCATCAATGAGGTGGAA
R:
GTCACGAGGCCACTATGGTTG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: