BtaEX0002318 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48412322-48476764:-
Coord C1 exon
chr2:48476158-48476764
Coord A exon
chr2:48418623-48418830
Coord C2 exon
chr2:48412322-48412431
Length
208 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTATTATCTTATAGGTG
3' ss Score
10
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTTGAAGGTCGGTCCGGACGTCGGACCCAGCTCGGTTCCCGGACTGTCCGGGCGGCAGCGGACGCCGCCGCCTCCTCGTCGCCTCAGCCTGGCGTTTTGTTCGGAGAGACCCGAGAGGCGAGCGGAGCTGACAGTGATTTTGACAGTGATTTAAACCCGCTTTTGTTGTTGTTGGCTTTTCGTTGTTTGGTTTTGTGTGTTGTGCTTGTGTGTGGCGATTTTTCCCCCCCGTGGTGCATTTTTTTTTTTATTGTTGTGCTCGCTCTTTTTATTTTTTATTTTTTCTATTTTTTTTTTTTGACCCCGTGAACGTTTTTTTGGTCGGGGCTTCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTGTCTCCGAGGAAGACCCAGGGAACTGGATATTTAGCGAGAACTTCCTACGGCTTCCCCTGCGTCTCGGGAAAATGGGAGCTGCTGCAAAGTTGGCGTTTGCCGTCTTTCTTATCTCTTGTTCTTCAG
Seq A exon
GTGCTATACTTGGTAGATCAGAAACTCAGGAGTGTATTTTCTATAATGCTAATTGGGAAAGAGATAGAACGAATCGCACTGGTGTTGAATCCTGTTACGGTGACAAAGATAAACGGCGGCATTGTTTTGCTACATGGAAGAATATTTCTGGTTCCATTGAAATAGTGAAGCAAGGTTGTTGGCTGGATGATATCAACTGCTATGACAG
Seq C2 exon
GACTGATTGTATAGAAAAAAAAGATAGCCCTGAAGTATATTTTTGTTGCTGTGAGGGCAATATGTGTAACGAAAGGTTTTCTTATTTTCCGGAGATGGAGGTCACACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114-'0-3,'0-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0106418=Activin_recp=PU(65.9=85.7)
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCCCGTGAACGTTTTT
R:
GTGACCTCCATCTCCGGAAAA
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development