RnoEX0006470 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:32947378-33006456:+
Coord C1 exon
chr3:32947378-32948041
Coord A exon
chr3:33003598-33003805
Coord C2 exon
chr3:33006347-33006456
Length
208 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTATCTTAACAGGTG
3' ss Score
12.12
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCCGGGTTGAAGGTCGGTCCGGACGTCGGAGCAGCTCGGCTCCCGGACCGTCCGGGCGGCTGCGGGCGCCGCCGCCGCCGCCGCCTCGTCGCCTCAGTCAGGCGTTTTGTTCACTGAGACGCGAGAGGCGAGCGGAGCTGACAGTGATTTTGACAGTGATTCCAACCCGCTTTTGTTGTTGTTGGCTTTTCGTTGTTTGGTTTTGTGTGTTGTGCGTGTATGTGGCGGTTTTTCCCCCGTGGTACAATTTTTTAAATTGTTGTGCCTTTTTCCCCCCTTTTTTCGACCCTGTGAACGTTTTTGCTCCCCCCTCCCCCCCGCCTCGGGGCTTCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTGTCTCCGAGGAAGACCCAGGGAACTGGATATCTAGCGAGAACTTCCTACGGCTTCTCCGGCGCCTCGGGAAAATGGGAGCTGCTGCAAAGTTGGCGTTCGCCGTCTTTCTTATCTCTTGCTCTTCAG
Seq A exon
GTGCTATACTTGGCAGATCGGAAACTCAGGAGTGTCTTTTCTTTAATGCTAATTGGGAAAGAGACAGAACCAATCAGACTGGTGTTGAGCCTTGCTATGGTGATAAAGACAAACGACGACATTGTTTTGCTACCTGGAAGAATATTTCTGGTTCCATTGAAATAGTAAAGCAAGGTTGTTGGCTGGATGATATCAACTGCTATGACAG
Seq C2 exon
GACTGATTGTATAGAAAAAAAAGACAGCCCTGAAGTGTACTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTCTCTTATTTTCCGGAGATGGAAGTCACACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0106418=Activin_recp=PU(65.9=85.7)
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTGTGCCTTTTTCCCCC
R:
TGCCCTCACAGCAACAAAAGT
Band lengths:
304-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]