MmuEX6101118 @ mm10
Exon Skipping
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48814109-48890441:+
Coord C1 exon
chr2:48814109-48814826
Coord A exon
chr2:48870289-48870496
Coord C2 exon
chr2:48890298-48890441
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCTGTTACCTTACAGGTG
3' ss Score
10.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTTGAAGGTCGGTCCGGACGTCGGAGCAGCTCGGCTCCCGGACCGTCCGGGCGGCTGCGGGCGCCGCCGCCGCCGCCTCGTCGCCTCAGCCAGGCGTTTTGTTCGCTGAGACGCGAGAGGCGAGCGGAGCTGACAGTGATTTTGACAGTGATTCCAACCCGCTTTTGTTGTTGTTGGCTTTTCGTTGTTTGGTTTGGTGTGTTGTGCGTGTATGTGGCGGTTTTTCCCCCGTGGTACATTTTTTTAAATTGTTGTGCCTTTTTTTTAAATCCTTTTTTTTTCAACCCTGTGAACGTTTTTTGCTTCCCCCTCCCCCCCGCCTCGGGGCTTCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTGTCTCCGAGGAAGACCCAGGGAACTGGATATCTAGCGAGAACTTCCTACGGCTTCTCCGGCGCCTCGGGAAAATGGGAGCTGCTGCAAAGTTGGCGTTCGCCGTCTTTCTTATCTCTTGCTCTTCAG
Seq A exon
GTGCTATACTTGGCAGATCAGAAACTCAGGAGTGTCTTTTCTTTAATGCTAATTGGGAAAGAGACAGAACCAACCAGACTGGTGTTGAACCTTGCTATGGTGATAAAGATAAACGGCGACATTGTTTTGCTACCTGGAAGAATATTTCTGGTTCCATTGAAATAGTGAAGCAAGGTTGTTGGCTGGATGATATCAACTGCTATGACAG
Seq C2 exon
GACCCAGGACCACCCCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTGTTAGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAATATGTGGCTGTCAAAATATTTCCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155_MULTIEX1-1/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0106418=Activin_recp=PU(65.9=85.7)
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGCTTCCCCCTCCCCC
R:
GGGCTTTCCAGACACAACCAA
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types