GgaEX1006207 @ galGal4
Exon Skipping
Gene
ENSGALG00000012444 | ACVR2A
Description
Activin receptor type-2A [Source:UniProtKB/Swiss-Prot;Acc:Q90669]
Coordinates
chr7:34001588-34046707:+
Coord C1 exon
chr7:34001588-34001642
Coord A exon
chr7:34031674-34031881
Coord C2 exon
chr7:34046564-34046707
Length
208 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTTCTTACCTCGAAGGTG
3' ss Score
8.57
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGGGAGCTGCTACGAAGTTAGCGTTCGCTGTTTTTCTCATCTCGTGTTCTTCAG
Seq A exon
GTGCCATTCTTGGCAGATCAGAAACACAAGAATGCATCTACTACAACGCTAATTGGGAGAAAGATAAAACAAATCGCAGTGGCATTGAACCCTGTTATGGAGATAAAGATAAAAGACGACACTGTTTTGCTACATGGAAGAATATCTCTGGATCAATTGAAATCGTGAAACAAGGTTGCTGGCTGGATGACATCAACTGTTACGACAG
Seq C2 exon
GATCCTGGACCACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTGTGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
PF0106418=Activin_recp=PU(65.9=85.7)
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGCTACGAAGTTAGCG
R:
CTGGATAGGGAATATTTTGACTGCA
Band lengths:
196-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]