BtaEX0002323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013843 | ACVRL1
Description
activin A receptor type II-like 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
chr5:28100218-28104324:-
Coord C1 exon
chr5:28104049-28104324
Coord A exon
chr5:28103101-28103298
Coord C2 exon
chr5:28100218-28100348
Length
198 bp
Sequences
Splice sites
3' ss Seq
GACAGGCCTGGTGCCCACAGGCC
3' ss Score
6.36
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTTATCGCCTCGGACATGACTTCCCGCAACTCGAGCACGCAGCTGTGGCTCATCACGCACTACCACGAGCACGGCTCGCTCTACGACTTTCTGCAGAGGCAGACGCTGGAGCCTCAGCTGGCCCTGAAGCTAGCCGTGTCCGCGGCCTGCGGCCTGGCGCACCTGCACGTGGAGATCTTCGGCACGCAGGGCAAACCGGCCATCGCCCACCGCGACCTCAAGAGCCGCAACGTGCTGGTCAAGAGCAACCTGCAGTGCTGCATCGCCGACCTGG
Seq A exon
GCCTGGCTGTGATGCACTCTCAGAGTAGCGATTACCTGGACATTGGCAACAACCCGCGAGTGGGCACCAAGCGGTACATGGCCCCTGAGGTGCTGGAAGAGCAGATCCGAACCGACTGCTTCGAATCCTACAAGTGGACGGACATCTGGGCCTTTGGCCTGGTGCTGTGGGAGATCACCCGCCGGACCATTGTCAATG
Seq C2 exon
GCATTGTGGAGGACTACCGGCCACCCTTCTATGATGTGGTGCCCAATGACCCCAGCTTTGAGGACATGAAGAAGGTGGTGTGTGTTGACCAGCAGACCCCCACCATCCCCAACCGGCTGGCTGCAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013843-'10-11,'10-9,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.8=100)
A:
PF0006920=Pkinase=FE(22.8=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCACGCACTACCACGAG
R:
ATAGAAGGGTGGCCGGTAGTC
Band lengths:
258-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development