MmuEX6056595 @ mm10
Exon Skipping
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101137364-101141197:+
Coord C1 exon
chr15:101137364-101137639
Coord A exon
chr15:101138208-101138405
Coord C2 exon
chr15:101141067-101141197
Length
198 bp
Sequences
Splice sites
3' ss Seq
GATAAGCCTAACACCCGCAGGAC
3' ss Score
3
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTTCATCGCCTCCGACATGACTTCGCGGAACTCGAGCACGCAGCTGTGGCTCATCACCCACTACCATGAACACGGCTCCCTCTATGACTTTCTGCAGAGGCAGACGCTGGAGCCCCAGTTGGCCCTGAGGCTAGCTGTGTCCGCGGCCTGCGGCCTGGCGCACCTACATGTGGAGATCTTTGGCACTCAAGGCAAACCAGCCATTGCCCATCGTGACCTCAAGAGTCGCAATGTGCTGGTCAAGAGTAACTTGCAGTGTTGCATTGCAGACCTGG
Seq A exon
GACTGGCTGTGATGCACTCACAAAGCAGCGATTACCTGGATATCGGCAACAACCCCCGAGTGGGTACCAAAAGATACATGGCACCCGAGGTGCTGGATGAGCACATCCGCACAGACTGCTTTGAGTCGTACAAGTGGACAGACATCTGGGCCTTTGGCCTAGTGCTATGGGAGATCGCCCGGCGGACCATCATCAATG
Seq C2 exon
GCATTGTGGAGGATTACAGGCCACCTTTCTATGACATGGTACCCAATGACCCCAGTTTTGAGGACATGAAAAAGGTGGTGTGCGTTGACCAGCAGACACCCACCATCCCTAACCGGCTGGCTGCAGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-'18-29,'18-25,19-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.8=100)
A:
PF0006920=Pkinase=FE(22.8=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACCATGAACACGGCTCC
R:
AAGGTGGCCTGTAATCCTCCA
Band lengths:
244-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types