GgaEX0018959 @ galGal4
Exon Skipping
Gene
ENSGALG00000012551 | ACVR1
Description
Activin receptor type-1 [Source:UniProtKB/Swiss-Prot;Acc:Q90ZK6]
Coordinates
chr7:35760052-35769942:-
Coord C1 exon
chr7:35769796-35769942
Coord A exon
chr7:35764459-35764656
Coord C2 exon
chr7:35760052-35760182
Length
198 bp
Sequences
Splice sites
3' ss Seq
GGTTCTTCTCTGTTGTTCAGGCC
3' ss Score
6.74
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAAAGGGCCGTTATGGAGAAGTCTGGAGGGGTCAGTGGCAAGGAGAGAATGTTGCTGTGAAGATCTTCTCTTCTAGGGATGAAAAATCCTGGTTCAGGGAAACTGAATTGTATAACACTGTGTTGCTGCGGCATGAAAACATTTTAG
Seq A exon
GCCTCGCAGTCATGCACTCCCAAAGCACGAACCAGTTGGATGTGGGGAACAACCCCCGAGTGGGCACCAAACGCTACATGGCTCCGGAGGTCTTGGACGAAACCATCCAGGCAGACTGCTTCGACTCCTACAAGAGGGTCGATATCTGGGCCTTCGGGCTGGTCCTGTGGGAGGTAGCTAGGCGCATGGTTAGCAATG
Seq C2 exon
GTATTGTAGAAGACTATAAACCACCATTTTATGACCTGGTTCCAAATGATCCCAGTTTTGAAGACATGAGGAAAGTGGTCTGTGTAGATCAGCAAAGGCCAAACATTCCCAACAGGTGGTTCTCAGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012551_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.0=100)
A:
PF0006920=Pkinase=FE(22.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCTGGAGGGGTCAGTG
R:
TGGGAATGTTTGGCCTTTGCT
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]