RnoEX0006448 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44434418-44448584:-
Coord C1 exon
chr3:44448309-44448584
Coord A exon
chr3:44444395-44444592
Coord C2 exon
chr3:44434418-44434548
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTTTTCCCTTTAGGCC
3' ss Score
12.26
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTCATTGCTTCAGACATGACCTCTAGACACTCCAGTACCCAGCTGTGGCTCATTACACATTACCACGAAATGGGATCGTTGTATGACTACCTTCAGCTCACCACTCTGGACACGGTTAGCTGCCTTCGGATCGTGTTGTCCATAGCCAGCGGCCTTGCACACTTGCACATAGAGATATTTGGGACCCAGGGGAAGTCTGCCATCGCCCACCGAGATCTAAAGAGCAAAAACATCCTCGTGAAGAAGAACGGACAGTGCTGCATAGCAGATTTGG
Seq A exon
GCCTGGCAGTCATGCATTCCCAGAGCACGAATCAGCTTGATGTGGGAAACAACCCCCGTGTGGGGACCAAGCGCTACATGGCCCCTGAAGTGCTTGATGAAACCATCCAAGTGGATTGCTTTGATTCTTATAAGAGGGTCGATATTTGGGCCTTTGGCCTCGTTCTGTGGGAAGTGGCCAGGAGGATGGTGAGCAATG
Seq C2 exon
GTATAGTGGAAGATTACAAGCCACCATTCTATGATGTTGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAAGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033-'19-16,'19-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.9=100)
A:
PF0006920=Pkinase=FE(22.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCGTGTTGTCCATAGCC
R:
GGCCTCTGTTGATCCACACAG
Band lengths:
248-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]