DreEX6081199 @ danRer10
Exon Skipping
Gene
ENSDARG00000018179 | acvrl1
Description
activin A receptor type II-like 1 [Source:ZFIN;Acc:ZDB-GENE-021003-1]
Coordinates
chr23:27913069-27918560:-
Coord C1 exon
chr23:27918285-27918560
Coord A exon
chr23:27915799-27915996
Coord C2 exon
chr23:27913069-27913199
Length
198 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGTTTGATCTCTCAGGCC
3' ss Score
9.34
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCTTCATAGCATCAGACATGACGTCTAAAAACTCCAGCACTCAACTGTGGCTGGTCACACATTTCCACGAGTTGGGCTCCCTCTATGACTTCCTGCAGTACAGCACGCTGGACCCGGAGGGCTGTCTGCGCATGTGCCTGTCCATCGCCAGCGGCCTCGTGCACCTCCACACAGAGATCCTCAGCACACAAGGCAAACCAGCCATCGCACACAGAGACCTGAAGAGCCGCAATATTCTGGTGAAGAGAAATGGCCAGTGCTGCATTGCAGACCTGG
Seq A exon
GCCTGGCTGTCATTCACTCTCAGTCTACTGACTATCTGGATGTGGGAACCAATCCGAGAGTGGGCACCAAGCGATACATGGCACCAGAGGTTTTGGATGAGACTATTCGTGTTGATGTTTTTGAGTCCTATAAACAAACTGACATCTGGGCCCTGGGTCTCGTCTTGTGGGAGATAACTCGTCGGACTATTGTAAATG
Seq C2 exon
GAATCGTGGAGGAGTACAGGCCGCCGTTCTTTGACATGGTGCCCTCTGACCCCAGTTTTGAGGAGATGAAGAAAGTGGTGTGTGTGGACCAGCACAGGCCCAGTCTCCACAATCGACTACACTCTCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018179-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.9=100)
A:
PF0006920=Pkinase=FE(22.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGTGGCTGGTCACACAT
R:
GGCCTGTACTCCTCCACGATT
Band lengths:
257-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]