RnoEX6034143 @ rn6
Exon Skipping
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142779384-142783062:+
Coord C1 exon
chr7:142779384-142779659
Coord A exon
chr7:142779799-142779996
Coord C2 exon
chr7:142782932-142783062
Length
198 bp
Sequences
Splice sites
3' ss Seq
GACACGCCAAACACCCGCAGGAT
3' ss Score
3.78
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTTCATCGCCTCCGACATGACCTCGCGGAACTCCAGCACGCAGCTGTGGCTTATCACCCACTACCACGAGCATGGCTCCCTCTATGACTTTCTGCAGAGGCAGACGCTGGAGCCCCAGTTGGCCCTGAGGCTGGCTGTGTCCGCGGCCTGCGGCCTGGCGCACCTGCATGTAGAGATCTTTGGCACTCAAGGCAAACCAGCCATCGCCCATCGTGACCTCAAGAGCCGCAACGTGCTGGTCAAGAGCAACTTGCAGTGTTGCATTGCAGACCTGG
Seq A exon
GATTGGCTGTGATGCACTCGCAAAGCAGCGATTACCTGGACATTGGTAACAACCCCCGAGTGGGTACCAAGAGATACATGGCACCCGAGGTGCTGGATGAGCAGATCCGCACAGACTGTTTTGAGTCGTACAAGTGGACAGACATCTGGGCCTTCGGCTTAGTGCTATGGGAGATTGCCCGGCGGACCATCATCAATG
Seq C2 exon
GCATTGTGGAGGACTACAGGCCACCCTTCTATGACATGGTACCCAATGACCCCAGTTTTGAGGACATGAAAAAGGTGGTGTGTGTTGACCAGCAGACCCCCACCATCCCTAACCGACTGGCAGCAGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.8=100)
A:
PF0006920=Pkinase=FE(22.8=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCCACTACCACGAGCAT
R:
GCCTGTAGTCCTCCACAATGC
Band lengths:
244-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]