BtaEX6009705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011909 | ACVR1
Description
Bos taurus activin A receptor, type I (ACVR1), mRNA. [Source:RefSeq mRNA;Acc:NM_176663]
Coordinates
chr2:39344743-39359557:+
Coord C1 exon
chr2:39344743-39345018
Coord A exon
chr2:39349081-39349278
Coord C2 exon
chr2:39359427-39359557
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTCTTCCTTTTAGGCC
3' ss Score
11.95
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTCATTGCTTCAGACATGACATCAAGACACTCCAGTACACAGTTGTGGTTGATCACACATTATCATGAAATGGGATCGCTGTACGACTACCTTCAGCTTACTACTCTGGATACAGTGAGCTGCCTGAGAATAGTGCTGTCCATAGCGAGCGGTCTCGCACATTTGCACATAGAGATCTTTGGGACCCAAGGGAAACCGGCCATTGCTCACCGAGATCTAAAAAGCAAAAACATCCTGGTTAAGAAGAATGGACAGTGTTGCATAGCAGATTTGG
Seq A exon
GCCTGGCAGTCATGCATTCCCAGAGCACCAATCAGCTCGATGTGGGGAACAACCCCCGTGTGGGCACCAAACGCTACATGGCCCCCGAAGTTCTTGATGAAACTATCCAGGTGGATTGTTTTGATTCTTACAAGAGAGTCGATATTTGGGCCTTTGGACTTGTCTTGTGGGAGGTGGCCAGGCGGATGGTGAGCAATG
Seq C2 exon
GTATTGTGGAGGATTACAAGCCACCATTCTATGATGTGGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAGGTAGTCTGTGTGGATCAACAGAGGCCTAACATACCCAACAGATGGTTCTCAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011909-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.9=100)
A:
PF0006920=Pkinase=FE(22.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTGAGAATAGTGCTGT
R:
GGCCTCTGTTGATCCACACAG
Band lengths:
256-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]