MmuEX6101416 @ mm10
Exon Skipping
Gene
ENSMUSG00000026836 | Acvr1
Description
activin A receptor, type 1 [Source:MGI Symbol;Acc:MGI:87911]
Coordinates
chr2:58448314-58463156:-
Coord C1 exon
chr2:58462881-58463156
Coord A exon
chr2:58458885-58459082
Coord C2 exon
chr2:58448314-58448444
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTTTTCCCTTTAGGCC
3' ss Score
12.26
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTCATCGCTTCAGACATGACCTCCAGACACTCCAGTACCCAGCTGTGGCTCATCACACATTACCATGAAATGGGATCGTTGTATGACTACCTTCAGCTCACTACTCTGGATACGGTTAGCTGCCTTCGGATTGTACTGTCCATAGCCAGCGGCCTTGCCCATTTGCACATAGAGATATTTGGGACCCAAGGGAAGTCCGCCATTGCCCATCGAGATCTGAAGAGCAAAAACATCCTGGTGAAGAAGAATGGACAGTGCTGCATAGCAGATTTGG
Seq A exon
GCCTGGCAGTCATGCATTCCCAGAGCACAAACCAGCTTGATGTGGGAAACAACCCCCGTGTGGGGACCAAGCGCTACATGGCTCCGGAAGTGCTCGATGAAACCATCCAAGTGGATTGCTTTGATTCTTATAAGAGGGTCGATATTTGGGCCTTTGGCCTTGTTCTGTGGGAAGTGGCCAGGCGAATGGTGAGCAATG
Seq C2 exon
GTATAGTGGAAGATTACAAGCCACCATTCTATGATGTGGTTCCCAATGACCCAAGTTTTGAAGATATGAGGAAAGTTGTCTGTGTGGATCAACAGAGGCCAAACATACCTAACAGATGGTTCTCAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026836-'36-17,'36-15,37-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(31.9=100)
A:
PF0006920=Pkinase=FE(22.9=100)
C2:
PF0006920=Pkinase=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTTCGGATTGTACTGT
R:
GGCCTCTGTTGATCCACACAG
Band lengths:
256-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types