BtaEX0002428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104394797-104395834:+
Coord C1 exon
chr11:104394797-104394932
Coord A exon
chr11:104395016-104395145
Coord C2 exon
chr11:104395652-104395834
Length
130 bp
Sequences
Splice sites
3' ss Seq
AGCCCCCTGTTCCCCTCCAGGGC
3' ss Score
10.17
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTTTACAGGCGCTACAGTGAGGAGTACGGCAGCCCCGCCCGCCCCGACATCACCTTCATCTACTTCCAGCCGGAGCAGCGGCGGGCCTGGGCGTGGGTCCCGGTGCAGGGGCCCTGCTCCGTGAGCTGCGGGGCAG
Seq A exon
GGCTGCGCCAGGTGACCTACAGGTGTCGGGACCAGTCCAGGAGCGAGTGGGTGGAGGCTGCCCACTGTGCAGGGAGCCAGCCCCCCGTGGCATGGTCAGAGACCTGCACCCCTGGGCCCTGCCCCCCGCA
Seq C2 exon
CTGGGAGGCTGGAGACTTCGGCCCCTGCAGCGCCTCGTGTGGGGGTGGCCTGCGGGAGCGAGAGGTGCGCTGCGTGGAGGCCCGGGGCGGCCTGCTGAGGACTGTTCCCCGCTCCCGGTGCAGAGCGCTGGCCCCGCAGCCGGCGGCCGTGGACACCTGCAATTCCCAGCCCTGCCCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'20-26,'20-25,21-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTACTTCCAGCCGGAGC
R:
CTGGGAATTGCAGGTGTCCAC
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development