MmuEX6099806 @ mm10
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26990310-26991447:+
Coord C1 exon
chr2:26990310-26990445
Coord A exon
chr2:26990526-26990655
Coord C2 exon
chr2:26991262-26991447
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTCTACCCTTCCAGGGC
3' ss Score
9.81
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTGTACAGACGATATGGAGGAGAATATGGGGATCTTACACACCCAGACATCACCTTTTCCTACTTTCAACTGAAGCAGCAGGCAGCCTGGGTATGGACCGCTAAGCGTGGACCCTGCTCAGTGAGCTGTGGGGCAG
Seq A exon
GGCTGCGCTGGGTGACCTACAGCTGCCAGGATCAAGCTCAAGACAAGTGGGTAAAGAACGCCCAGTGCCAAGGGAGCCCACAGCCACCTGCATGGCAAGAGCCTTGTGTCTCTGCCCCCTGCTCCCCATA
Seq C2 exon
TTGGGTAGCTGGGGACTTCAGCCCATGTAGCGTGTCTTGTGGCGGGGGCCTTCGGGAGCGGTCACTGCGCTGTGTAGAGACCCAAGATGGCTTCTTAAAGACACTGCCACCTGCCCGGTGCAGAGCAGTAGCCCAGCAGCCAGCAGCAGAAGTGGAAAACTGCAACTCCCAGCCCTGTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'11-32,'11-22,20-32=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(17.7=47.8)
A:
NO
C2:
PF0009014=TSP_1=WD(100=92.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAACTGAAGCAGCAGGC
R:
GCTGGGAGTTGCAGTTTTCCA
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types