GgaEX7009810 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6916717-6919119:+
Coord C1 exon
chr17:6916717-6916852
Coord A exon
chr17:6918605-6918734
Coord C2 exon
chr17:6918930-6919119
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTTTACTTTCACATCCAAGGTA
3' ss Score
5.85
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTATAGAAGGTATGCAAAAGAATATGGCGATGCCACCAACCCAGACATCACCTTCAGCTACTTTGTGCCAAAAGAGAATCTGACGTATAGGTGGATTCCTCACGAGGGGCCGTGTTCAGTGACCTGTGGAGGAG
Seq A exon
GTACACAACTTGTGAACTATGTGTGCTTTGATCAGATGAAGAATGAAATAACAGAAAATCAGCTGTGTCTGGGACTCCTACAACCCCTTCCAGGGTATGAACCCTGTGCCGTGGAACCATGCCCATACAG
Seq C2 exon
GTGGAAGATATCTCAGACAGATGAATGCTCTGCTGTTTGTGGAAGCGGCGTTGCCCAGCAGAATCTGACCTGTGTTCAGTTTCATAATGGATCGGAGACTGTTGTGGATGACAGCTTATGTTCTGCACGAGAAAAACCACTCTCCATTGTGCCGTGTGTAGTTAATGTCTGCCCTTTGGGATGGGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(18.4=50.0),PF0009014=TSP_1=PU(25.5=30.4)
A:
PF0009014=TSP_1=PD(72.7=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGACATCACCTTCAGCT
R:
CGGCACAATGGAGAGTGGTTT
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]