BtaEX0002719 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017632 | AEN
Description
apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:HGNC:25722]
Coordinates
chr21:20002742-20007367:+
Coord C1 exon
chr21:20002742-20003281
Coord A exon
chr21:20006107-20006307
Coord C2 exon
chr21:20007131-20007367
Length
201 bp
Sequences
Splice sites
3' ss Seq
GACTCCTCCTCTGTTCACAGATC
3' ss Score
10.43
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCCTTCCCTGGCCAGCCCGAATGCCAAGGATGTGCTTCGGAGGAAGCACAAGAGGAAGAGCCGACAGCACCAGCGCTTCATGGCCCGGAAGGCCTTGCTGCAGGAGCAGGGACTGCTGAGCCCACTCTGGGAGCCAGGACCCTCCCCTCTGCCTACGTTGCCCGGGGCCCCGCCAGGCACAGAAGCCACCAGCAGTGCCAGGCAGCGTCCGCGGGCTGAACCTGGAGGTGCTGGGTGCAGCAGAAAGCCAGCTCCCAGGGACTCTGCCGGCCCCTTGCCCAGCAAATGCGTGGCCATCGACTGCGAGATGGTGGGCACAGGACCCCGAGGGCGCGTGAGTGAGCTGGCCCGCTGCTCCGTGGTGAGCTACCACGGCGAGGTCCTCTACGACAAGTACATCCGGCCTGAGATGCCCATCGTGGACTACCGCACGCGCTGGAGCGGCATCACCCGGCAGCACATGCGCAAAGCCATCCCCTTCCAAGTGGCCCAGAAAGAG
Seq A exon
ATCCTCAAGCTCTTGAAGGGCAAGGTGGTGGTGGGCCACGCCCTGCACAACGATTTCCAGGCCCTCAAGTACATCCACCCTCGGGGCCAGACCCGGGATACCACCTCCGTCCCCAGCCTCCTCAGCCAGCCAGGGCTCCACGTCCGGAATCGTGTCTCTCTTAAGGACCTGGCCCTGCAGCTGCTGCACAAGAAGATCCAG
Seq C2 exon
GTGGGCCAGCACGGGCACTCGTCAGTAGAAGACGCCGTGACAGCCATGGAGCTCTACCGGCTGGTGGAGGTGCAGTGGGAGCAGCAGGTGGCCAGCAGCCTCCGGGCGCCGCCTGAGGACAGAGAGCCCGACAGCAGCACAGACATGGAGCAGTACATGGAGGACCAGTACTGGCCGGCGGACCCGGCCCAGGGCACCAGCGGAGACCCGGGGGCAGCGCCGGGCAGAAGGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017632-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=0.179 C2=0.679
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=38.3)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGTCCTCTACGACAAGT
R:
TGGTCCTCCATGTACTGCTCC
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development