RnoEX6003362 @ rn6
Exon Skipping
Gene
ENSRNOG00000018421 | Aen
Description
apoptosis enhancing nuclease [Source:RGD Symbol;Acc:1305051]
Coordinates
chr1:140587564-140593745:+
Coord C1 exon
chr1:140587564-140588151
Coord A exon
chr1:140591076-140591276
Coord C2 exon
chr1:140592455-140593745
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTTTCCACCCACAGATC
3' ss Score
12.96
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTCCCTCACTAGCCTGAAGACCAAGGATGTGGCTCGGAGGAGACACAAAAGGAGAAGCCGGCAGCACCAGCGGTTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGTCGTTGAGCATGGTACCAGGGCCAGGACTCTGCCCTCTGCCCTCCCCAACACAGACGCCAGCAGGCACAGAGGCTTCAGGCAACAGGAAACAACGTACCAAGGCCAGGTCTGGCAGCAAAGGCCTGTGTAGCAAAAGGCCTGTCCCCAGAGAAGCCCCAAGCTCTGGGCCCAGCAAGTATGTGGCCATTGACTGTGAGATGGTGGGTACCGGCCCCCAAGGGCGAGTGAGTGAGCTAGCCCGCTGCTCCGTGGTGAGTTACAGTGGTGATGTTCTCTATGACAAGTACATCCGGCCTGAAATGCCCATTGTGGACTATCGAACCCGCTGGAGCGGCATTACCCGTCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAGGAG
Seq A exon
ATCCTTAAGCTGCTGAAGGGCAAGGTGGTGGTGGGGCATGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTGGGAGCCAGATCCGGGATACGACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTCACCCGAGCTCGGGTCTCTCTTAAGGACCTGGCCCTGAACCTGCTGCACAAGAAGATCCAG
Seq C2 exon
GTAGGTCACCATGGACACTCATCTGTGGAGGATGCCATGACAGCCATGGAGCTGTACCAGCTGGTGGAGGTGCAGTGGGAACAGCAAGTGGCCAGCACCGCCAAGGCCCATCCTGAGGACAGGGGCCCTGACAGCAGCACTGATGTGGAGCAGTACATGGACGACCAGTACTGGCCTGAGGACCTGGCCCAGAGCACCAGGGGAGACACAAGGGAGGCCCAGGATAGACAGGAGGGAGAGGAAGGGCAGGGAGCCAGGAGTGCTCCTCCCTAGTCACACAGGGTGGGAGGTAACTGAAGTAACCTCCTGGTAACCAGGATCAGGGTTCTAAGGCAATGTTTCTCAAAACCTGATGGTCAGGACTCCTTTGTGGGGTTGAAAAACCTTTTCACAGGGGTCACCTAAGACCATCAGAAGACACAGGTATTTACATTATGATCCGTAACTAGCAAAATTACAGTTATGAAGTAGCAACAAAAATGATTTTATTTTGGGGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018421-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.015 C2=0.756
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=39.4)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=19.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGGTGAGTTACAGTGGT
R:
TCGTCCATGTACTGCTCCACA
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]