GgaEX1006846 @ galGal3
Exon Skipping
Gene
ENSGALG00000006736 | AEN
Description
NA
Coordinates
chr10:14819877-14821902:-
Coord C1 exon
chr10:14821345-14821902
Coord A exon
chr10:14820728-14820928
Coord C2 exon
chr10:14819877-14820406
Length
201 bp
Sequences
Splice sites
3' ss Seq
AACCCCTCTGACAATTCCAGATC
3' ss Score
7.18
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CGCCGCAGGGTCCTGGCAGCAAGAAGAAGAGCCGCAGGCACCAGCGCTTCATGGAGCGGCGGGCGCTGCTGGAGCGGAGGGGGCTGCTGAGACCCCGCCATCGGTTGGGCACTCAGGGACCCCCGGGTGGGCTCAGCAGTGTGACACCACGCGGCTGGAAGGTCTCCAAGCTGGGGCTCTCCGTGTCCCCATCCGCCTCCCCGAACGACATCGTGGGCCGCTGCTGCGGGACGTCCGTGGGTAACGCCGTGACGGGGGTCCAGCTTTGCCCGCCACGTCCCAACAAGTATGTGGCCATTGACTGCGAGATGGTGGGCACGGGCCCGCGGGGCAGGCAGAGCGAGCTGGCACGCTGCTCCATCGTCAGCTATGACGGGGACGTCATCTATGACAAATACGTCCTGCCCCTGCTGCCCGTCGTGGACTTCCGCACCCGATGGAGCGGCATCACCAAACGGCACATGGAGAGCGCCATCCCATTCCGGGCCGCCCAGGAGGAG
Seq A exon
ATCCTGAAGATCCTGAAGGACAGGATCGTGGTTGGGCACGCCATCCACAACGACTTCCAGGCCCTGAAGTACTTCCACCCCAAGGAGAGGACGCGGGACACCAGCCGTATCCCACTGCTCAACCAGAGGGCCGGGCTGCCCCCTGGGGCCAATGCCTCGCTTAAGAGCCTGGCCAGACACCTGCTGCAGAAGAAGATCCAG
Seq C2 exon
GTGGGCTGCAAAGGGCATTCATCGGTGGAGGATGCGCGGACTGCCATGGAGCTGTACAGACTGGTGGAGGTGCCGTGGGAGGCAGAGCTGGCTCGCAGCCAACCCCCCCGACCCCCCAGCCCCACAGACCCCATCACCGACAGCCACCAGTACATGGATGACCAGTACTGGCCCCAGGACCTGATGGTGGGCACCCTGTGACCGGGGACAGCTCTCTGTCCGTGGTGTTGGGGACATCCCTGTGCCTTCACCTCTGAGGTGTGGAGGGACACGTGGGGTCCTGGTGCCACCCTGGACGAACACAGCGGTGGAGTGGGGCTCTTAAGGCACCTCCGATGCCCTCCGAGGGAATGCCCTGCCTGGTGTCACCATGCTGCTCGTGGTGGGAGAGCTGAGGCGAGTGGTTTCTCTGCAGGTTCTGTGGTCCATGATGCACATCGTGGCCCTGCGGCAGCAGTTCAGAGCTGCTGTGCTGCTGCCTGGTTGCTGCAGAGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006736-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.134 C2=0.379
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=41.1)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=26.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCCAACAAGTATGTGGC
R:
TCCACCAGTCTGTACAGCTCC
Band lengths:
294-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]