BtaEX0002866 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52681229-52683007:-
Coord C1 exon
chr16:52682864-52683007
Coord A exon
chr16:52682633-52682757
Coord C2 exon
chr16:52681229-52681356
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTCTGTGCTCCAGACT
3' ss Score
8
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CCTGCAGCTGTGACCCCCGGGGTGCCGTGCGGGACGACTGTGAGCAGATGACTGGGCTATGTTCCTGTAAGCCTGGGGTGGCCGGGCCCAAGTGTGGGCAGTGTCCAGATGGCCGTGCCCTGGGCCCTGCTGGCTGTGAAACAG
Seq A exon
ACTCTTCGCCACCCAAGACCTGTGCTGAGATGCTTTGTGAGTTTGGGGCATCCTGTGTGGAGGAGGCTGGCTCTGCCCACTGCGTGTGCCCAACACCCACCTGTCCAGGGGCCGATGCTACCAAG
Seq C2 exon
CCACCAAGGTGTTCCAGGGTGTGCTGGAGCTTGAGGGGGTCGAGGGGCAAGAACTGTTCTACACGCCGGAGATGGCAGACCCCAAGTCTGAGCTGTTTGGGGAGACTGCCAGGAGCATTGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191_MULTIEX2-10/13=9-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(85.5=95.9)
A:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0005016=Kazal_1=PU(28.6=33.3)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGACTGTGAGCAGATGA
R:
TGCGCTCTCAATGCTCCTG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development