GgaEX6023921 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2724147-2724956:-
Coord C1 exon
chr21:2724813-2724956
Coord A exon
chr21:2724513-2724637
Coord C2 exon
chr21:2724147-2724252
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTGTCCCTACCCTAGACC
3' ss Score
10.13
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
CCTGTAACTGCGACCCGGTGGGCTCAGTGCGTGATGACTGCGAGCAGATGACTGGGCTCTGCTCCTGCAAGACTGGGATCACTGGCATGAAGTGCAACCAGTGTCCCAACGGCAGCAAGATGGGCATGGCTGGCTGTGAAAAAG
Seq A exon
ACCCATCAGCTCCAAAATCCTGTGAGGAAATGAGCTGCGAGTTCGGGGCTACGTGTGTGGAGGTCAACGGCTTTGCCCACTGCGAGTGCCCGTCCCCACTCTGCTCAGAGGCCAACATGACCAAG
Seq C2 exon
GTGTGTGGCTCTGATGGTGTTACCTATGGGGACCAGTGCCAGCTGAAGACCATTGCGTGCCGGCAGGGACAGCTCATCACAGTGAAACACGTGGGGCAATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'37-32,'37-31,38-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(85.5=95.9)
A:
PF0005319=Laminin_EGF=PD(12.7=16.7),PF0005016=Kazal_1=PU(34.0=42.9)
C2:
PF0005016=Kazal_1=PD(62.3=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAACTGCGACCCGGTG
R:
ATTGCCCCACGTGTTTCACTG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]