BtaEX0003409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13455386-13466134:-
Coord C1 exon
chr6:13466062-13466134
Coord A exon
chr6:13464802-13464855
Coord C2 exon
chr6:13455386-13455469
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTCACTTACATGTTAACAGCTT
3' ss Score
4.76
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ACTATCACTGAAAAACACAAGCTAAATGTTCCTGAGACCATGACTGAGGTTCTTGATGTTTCTGATGAAGAGG
Seq A exon
CTTTTAAACAGTTTGGTGACCACTTTATTGATGGGGAAGTTCTTAGTGATTCAG
Seq C2 exon
GTGATGACACAATGACGGGTGATGGGGGAGAGTACCTTAGACCTGAGGACCTAAAGGAGCTGGGTGATGACTCCCTCCCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=0.211 C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000003097fB554
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCTAAATGTTCCTGAGACC
R:
GGAGTCATCACCCAGCTCCTT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development