RnoEX0009353 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231286294-231292973:-
Coord C1 exon
chr2:231292901-231292973
Coord A exon
chr2:231291360-231291413
Coord C2 exon
chr2:231286294-231286319
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCATCCATGTGTTGTATAGCTC
3' ss Score
5.3
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAAGTTCTGGATGTTTCTGATGAAGAGG
Seq A exon
CTCTTAAGCAGTTCGGCGACCACTTTATTGATGGGGAAGCGCTTAGTGACTCAG
Seq C2 exon
GTGATGACACAGTGACAGGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=0.158 C2=0.991
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080637fB1061
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAAAACATAAGCTAAATGTTCC
R:
CCCATCACCTGTCACTGTGTC
Band lengths:
93-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]