GgaEX0018072 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56393769-56405481:-
Coord C1 exon
chr4:56405409-56405481
Coord A exon
chr4:56403920-56404000
Coord C2 exon
chr4:56393769-56393913
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGAATCTATATGTTGCACAGCCT
3' ss Score
3.18
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
ACTGTAACAGAGAAGCACAAGCTAAATGTACCCGAAACAATGACTGAGGTCCTGGATGTTTCAGATGAAGAAG
Seq A exon
CCTTTAAACACTCTGATGATGAACGCTTCAGTGATGGGGAAGTATATAATGGCACAGGTGTCATTAGCAGAAATTCGTGGA
Seq C2 exon
GTGATGATACAATGACAGGAGATGGAGGAGAGTACCTTAGGCCAGAAGACCTCAAAGAACTAGGAGATGACTCTTTACCAAGCAGCCAGTTCTTAGATGGTATGAACTACCTGAGGTACAGCTTGGAAGGAGGGCGATCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.607 C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019661fB2127
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAAACAATGACTGAGGTCC
R:
CCCTCCTTCCAAGCTGTACCT
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]