MmuEX0004891 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126684718-126691134:-
Coord C1 exon
chr3:126691062-126691134
Coord A exon
chr3:126689503-126689556
Coord C2 exon
chr3:126684718-126684862
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCATTCATATGTTGTACAGCCC
3' ss Score
4.27
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAGGTCCTTGATGTTTCTGATGAAGAGG
Seq A exon
CCCTTAAGCAGTTTGGTGACCACTTTATTGATGGGGAAGCATTTAGTGACTCAG
Seq C2 exon
GTGATGACACTGTGACAGGTGATGGGGGAGAATACCTCAGGCCAGAAGATCTCAAGGAGCTCGGAGATGACTCACTGCCCAGCAGTCAGTTCCTGGATGGCATGAACTACCTTCGGTACAGTCTGGAGGGAGGAAGATCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.211 C2=0.506
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAATGACGGAGGTCCT
R:
AGGAACTGACTGCTGGGCA
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: